FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31300360
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG959702630.661072268817357No Hit
AACGTCAA797185725.46889876026985No Hit
GCATCTCC736715923.53697848842633No Hit
TGTAAGGT585329318.7004015289281No Hit
AGCGTCAA531580.16983191247640603No Hit
GCATCTCA433580.13852236843282315No Hit
CTGCGATA418350.13365660970033572No Hit
AACCTCAA349500.11166005758400223No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)