FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31150709
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCGATG955370030.669285890090016No Hit
AACGTCAA793454225.47146519201216No Hit
GCATCTCC732185523.504617503248483No Hit
TGTAAGGT582824718.70983739086003No Hit
AGCGTCAA532300.17087893569292437No Hit
GCATCTCA436240.14004175635296134No Hit
CTGCGATA423030.1358010824087503No Hit
AACCTCAA346140.11111785609759314No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)