FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16729494
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCATCG513641230.70273374675887No Hit
ATTGGCGT449340826.859198491000384Illumina PCR Primer Index 6 (100% over 8bp)
GCAACAAA338729720.24745637853721No Hit
TAGTTGTC327953119.603288658939714No Hit
CCAACAAA618300.36958679084974116No Hit
GAAACAAA293710.1755641862210537No Hit
ACAACAAA248860.1487552462734378No Hit
CGCCCTCG213660.1277145620782075No Hit
GCAAAAAA201780.12061333116231729No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)