FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32779507
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCCATCG991431830.245476236113007No Hit
ATTGGCGT915351927.924516985566623Illumina PCR Primer Index 6 (100% over 8bp)
GCAACAAA672378920.51217243749273No Hit
TAGTTGTC656003220.01260116572223No Hit
CCAACAAA492880.15036223699154475No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)