FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39784426
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG1278220932.12867517555739No Hit
CCTACGTA987844424.829927167982767No Hit
TGCTGAGT868219321.82309479593849No Hit
ATAGTTAC754100518.95466582828165No Hit
CCTATGTA829720.20855397034005213No Hit
ATAGTTAA452870.11383097496492722No Hit
TGCGGAGT451090.11338356370907551No Hit
GAGCACCA448700.11278282612397121No Hit
CCTACGAA402570.10118783666754423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)