FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38150920
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG1225880932.13240729188182No Hit
CCTACGTA947365324.832043368809977No Hit
TGCTGAGT835046821.88798592537218No Hit
ATAGTTAC723331518.959739371946995No Hit
CCTATGTA800730.20988484681365482No Hit
CTAGTTAC488310.12799429214288935No Hit
TGCGGAGT481990.12633771348109038No Hit
ATAGTTAA450910.11819112094806625No Hit
GAGCACCA432320.11331836820711008No Hit
CCTACGAA397830.10427795712396974No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)