FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39297022
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG1263275632.14685326536957No Hit
CCTACGTA977488724.874370887442822No Hit
TGCTGAGT860287921.891936238832553No Hit
ATAGTTAC745949618.98234426008159No Hit
CCTATGTA825830.21015078445384486No Hit
TGCGGAGT462850.11778246198910441No Hit
ATAGTTAA454410.11563471654416968No Hit
GAGCACCA448910.1142351193940345No Hit
CCTACGAA409820.10428780073971No Hit
CTAGTTAC397250.10108908507112828No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)