FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36281820
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCACCG1158239231.923404062971482No Hit
CCTACGTA915185125.22434376224787No Hit
TGCTGAGT806868722.2389257209258No Hit
ATAGTTAC698465519.251115296862174No Hit
TGCGGAGT403830.11130367770966286No Hit
GAGCACCA396300.10922825811935563No Hit
ATAGTTAA388810.10716386333430902No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)