FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79329694
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT2170877127.36525241103287No Hit
CTCGCGTA1923034024.24103640182956No Hit
TCTATCCG1896500423.906563915398436No Hit
AAATGTGC1855085623.3845046723614No Hit
TCTATCCA856790.10800369405181368No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)