FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80481415
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT2203402527.377780323569112No Hit
CTCGCGTA1949975624.228893092896044No Hit
TCTATCCG1924859323.916817317389363No Hit
AAATGTGC1881301623.37560292646445No Hit
TCTATCCA874180.1086188656101536No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)