FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2471850
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT63900725.85136638550074No Hit
TCTATCCG63464525.674899366870967No Hit
AAATGTGC59329024.001860954345936No Hit
CTCGCGTA57096823.098812630216234No Hit
TCTATCCA28580.11562190262354108No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)