FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2465599
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT63662225.820175949130412No Hit
TCTATCCG63178925.624158673004004No Hit
AAATGTGC59171823.998955223456857No Hit
CTCGCGTA57159923.182966897699096No Hit
TCTATCCA27920.11323820296812255No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)