FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67031751
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA3308440.49356311757393895No Hit
CCACCTACTAAGAACGGCCATGCACCAC3096970.4620153813377186No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2848300.42491803623032315No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2221500.33141011041170626No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA2155650.3215864076115213No Hit
CCACCAACTAAGAACGGCCATGCACCAC2010570.29994293301393843No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC1832280.2733450898515242No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1263060.188427123140495No Hit
ACGGCCATGCACCACCACCCACGGAATC1057940.1578266991712629No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA1055800.15750744747813614No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA1009550.15060773214771012No Hit
CTCGTACTGAGCAGGATTACCATGGCAA951450.14194019786235332No Hit
GCTTCACAATGATAGGAAGAGCCGACAT847720.12646544172775673No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT819330.12223013538763146No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT803890.11992674934002544No Hit
AGGCCGTATCGTTCCGCCTGGGCGGGAT701760.10469068606010308No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT699050.10428640003749864No Hit
ACACCAAATGTCTGAACCTGCGGTTCCT687870.10261853371546269No Hit
GTGGGCAAATTTAAAGTTGAACTAAGAT673130.10041957579177666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)