FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66045202
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC2198397533.28625597965466No Hit
GGCGAGTA1858234128.135792513739304No Hit
CAAATACG1228345418.598556182779184No Hit
ACTTCTAT1115663616.89242467605747No Hit
TCTTCTAT2710760.4104401103959074No Hit
CCTTCTAT2452750.37137444140151166No Hit
GCTTCTAT1206270.18264309343773374No Hit
TTGNGCGC904560.13696074394624458No Hit
GTGCGCGC766790.11610078806330246No Hit
GGCNAGTA763970.11567380776577835No Hit
CAAATACA695730.10534149021150696No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)