FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66045202
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA3238480.49034296238506475No Hit
CCACCTACTAAGAACGGCCATGCACCAC3030510.4588539224999267No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA2795760.4233100839028397No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC2178370.32983016692113376No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA2088500.31622281963798066No Hit
CCACCAACTAAGAACGGCCATGCACCAC1973220.29876810733351983No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC1801380.2727495632460932No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG1232590.18662824288129212No Hit
ACGGCCATGCACCACCACCCACGGAATC1034040.15656549888362822No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA1023360.1549484245653454No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA977590.14801832236049486No Hit
CTCGTACTGAGCAGGATTACCATGGCAA927020.1403614451811352No Hit
GCTTCACAATGATAGGAAGAGCCGACAT825860.1250446625933554No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT807130.12220872607823956No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT790550.11969832418712263No Hit
AGGCCGTATCGTTCCGCCTGGGCGGGAT694790.1051991634456656No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT693390.10498718741143377No Hit
ACACCAAATGTCTGAACCTGCGGTTCCT681790.10323081455637004No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)