FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7782997
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC259184633.301387627413966No Hit
GGCGAGTA219054228.145224776522465No Hit
CAAATACG145768318.729070562406744No Hit
ACTTCTAT121247215.578471891997388No Hit
TCTTCTAT821901.0560199367929861No Hit
GCTTCTAT816271.0487862194987354No Hit
CCTTCTAT478710.6150715463464781No Hit
GTGCGCGC183030.2351664789283614No Hit
CAAATACA81010.10408586820732425No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)