FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205442

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205442
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7782997
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA383820.49315193106203176No Hit
CCACCTACTAAGAACGGCCATGCACCAC361340.4642684559688253No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA333690.42874229554501947No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC266210.34204047618160455No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA244960.31473736916511724No Hit
CCACCAACTAAGAACGGCCATGCACCAC234220.3009380576659608No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC225150.28928444916527657No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG153100.19671085572819827No Hit
ACGGCCATGCACCACCACCCACGGAATC124990.16059366334074135No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA120560.15490176856036306No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA116450.14962102645035066No Hit
CTCGTACTGAGCAGGATTACCATGGCAA108750.13972766531967054No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT95760.12303743660700371No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT95320.12247210168525055No Hit
GCTTCACAATGATAGGAAGAGCCGACAT94700.12167549338641657No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT84800.1089554576469707No Hit
ACACCAAATGTCTGAACCTGCGGTTCCT80370.10326356286659238No Hit
AGGCCGTATCGTTCCGCCTGGGCGGGAT78570.10095082909578407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)