FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7800179
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGCGC260124933.34858084667031No Hit
GGCGAGTA219719928.16857151611521No Hit
CAAATACG145830618.69580172455017No Hit
ACTTCTAT122102415.653794611636476No Hit
TCTTCTAT796091.02060478355689No Hit
GCTTCTAT792201.0156177185164597No Hit
CCTTCTAT478890.6139474491546925No Hit
GTGCGCGC161490.20703371038023616No Hit
CAAATACA78780.10099768223267697No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)