FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7800179
Sequences flagged as poor quality0
Sequence length28
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTCGTTATCGGAATTAACCAGACAAA388030.49746294283759385No Hit
CCACCTACTAAGAACGGCCATGCACCAC364550.46736106953442996No Hit
GTCTCGTTCGTTATCGGAATTAACCAGA329460.4223749224216521No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGC268500.3442228697572197No Hit
TGCCCTCCAATGGATCCTCGTTAAAGGA248480.3185567920941301No Hit
CCACCAACTAAGAACGGCCATGCACCAC238600.3058904161045535No Hit
CGTCCATTCTCGACTGCCGGCGACGGCC218700.28037818106481915No Hit
GCTGCGGATATGGGTACGGCCCGGCGCG156050.20005951145480122No Hit
ACGGCCATGCACCACCACCCACGGAATC124880.1600988900382927No Hit
ACGGGCTTTTTAACTGCAGCAACTTTAA122270.1567528129803175No Hit
TGCCCTACAATGGATCCTCGTTAAAGGA117960.1512272987581439No Hit
CTCGTACTGAGCAGGATTACCATGGCAA107370.13765068724704907No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTT96850.12416381726624479No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAAT95800.12281769431188695No Hit
GCTTCACAATGATAGGAAGAGCCGACAT91770.11765114621087541No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAAT82630.10593346639865572No Hit
ACACCAAATGTCTGAACCTGCGGTTCCT80010.10257456912206757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)