FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006205470

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205470
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12469829
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGTTATAGTGTAGATCTC265630.21301815766679721Illumina Single End PCR Primer 1 (97% over 35bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGTTATAGTGTAGATCT169710.13609649338415147Illumina Single End PCR Primer 1 (97% over 36bp)
CAGAGACCCAAGCACCTGGAGGCTCTGTGTGTGGGTCGCTGATTTCTTGG139530.11189407649455337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)