FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006205482

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205482
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12303136
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCGCGTGTAGATCTC237850.19332469380164535Illumina Single End PCR Primer 1 (97% over 34bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTACAGGCGCGTGTAGATCT236920.1925687889656751Illumina Single End PCR Primer 1 (97% over 35bp)
GCCAGCTGAAGGAAAGAGGAAGTGCTAGAGAGAGCCCCCTTCAGTGTGCT127380.10353457850096105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)