FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006205486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12125655
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGCGAGACGTGTAGATCTC463690.3824040845628545Illumina Single End PCR Primer 1 (96% over 33bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTGCGAGACGTGTAGATCT169980.1401821179969247Illumina Single End PCR Primer 1 (97% over 34bp)
GCCAGCTGAAGGAAAGAGGAAGTGCTAGAGAGAGCCCCCTTCAGTGTGCT131660.1085797014676733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)