FastQCFastQC Report
Wed 1 May 2024
EGAF00006205494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13142555
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCAATTAACGTGTAGATCTC456180.34710145782155755Illumina Single End Sequencing Primer (100% over 31bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTCAATTAACGTGTAGATCT363160.2763237437469351Illumina Single End Sequencing Primer (100% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)