FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006205506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13235978
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCTTGTCAGTGTAGATCTC280720.21208859670210997Illumina Single End PCR Primer 1 (96% over 31bp)
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCTTGTCAGTGTAGATCT209760.1584771446431839Illumina Single End PCR Primer 1 (96% over 32bp)
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC148980.11255685072912633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)