FastQCFastQC Report
Sat 1 Apr 2023
EGAF00006205512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13272362
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGACCTGAAGTGTAGATCTC267870.20182541735977366Illumina Single End PCR Primer 1 (96% over 31bp)
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC153330.11552578207255047No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGACCTGAAGTGTAGATCT139280.10493987430421202Illumina Single End PCR Primer 1 (96% over 32bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)