FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31489794
Sequences flagged as poor quality0
Sequence length91
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCT1144830.36355588734559524No Hit
GAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAAC977770.31050377782719063No Hit
CCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGC840290.266845187999642No Hit
CAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCA815590.2590013767635317No Hit
CATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTA682940.21687661723033183No Hit
ATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGG656620.20851835359735918No Hit
CGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAA592620.18819430828921904No Hit
AACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCAC494170.15693021046755656No Hit
CAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTA466090.1480130355886101No Hit
CCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGC445590.14150298982584644No Hit
CACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCC428790.13616792793245963No Hit
GCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATT424100.1346785564872225No Hit
CATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAG420220.1334464112404165No Hit
GGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAACCATCAG411110.13055341041608592No Hit
TTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTA403100.128009729120489No Hit
CCCTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAA401650.12754926246897647No Hit
CCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAG391030.12417674120065694No Hit
CCCACTTCTTACCACAAGGCACACCTACACCCCTTATCCCCATACTAGTT383700.12184900288645902No Hit
ATTAAAAATGCCCTAGCCCACTTCTTACCACAAGGCACACCTACACCCCT382010.12131232106504095No Hit
CCACAAGGCACACCTACACCCCTTATCCCCATACTAGTTATTATCGAAAC380330.12077881487570227No Hit
GCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCAT371710.11804142002326214No Hit
AATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTAC366160.11627894421919686No Hit
CTGGCCGTACGCCTAACCGCTAACATTACTGCAGGCCACCTACTCATGCA365600.11610110882275064No Hit
CTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACTGC364770.11583753136016069No Hit
AAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACC360330.11442755071690847No Hit
TACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTACT353080.11212521745934571No Hit
ATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACG342150.10865425159656492No Hit
CCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTAACCGCTAACATTA342140.1086510759644855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)