FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49406391
Sequences flagged as poor quality0
Sequence length91
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAG1340670.2713555823172755No Hit
GAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATA1144290.23160768816325805No Hit
GGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTG1136230.22997632026998288No Hit
CTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAG1094730.22157659724629553No Hit
ATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAAT1059120.2143690276830785No Hit
GATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAAC950340.1923516332127963No Hit
ATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACC943550.19097731708434237No Hit
AATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAA932350.1887104038827689No Hit
TAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTA846570.17134827759428936No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT840240.1700670668294715No Hit
ATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAA800620.16204786137890542No Hit
CCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATT768510.15554870219118008No Hit
CATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAG733670.14849698291057123No Hit
CTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAAT700610.141805540906641No Hit
CCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCA688380.13933015265170856No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA667820.13516874770310586No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT667640.13513231516950913No Hit
CTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATG641760.12989412645015905No Hit
CTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAG614340.1243442371655926No Hit
CATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTA612150.12390097467349923No Hit
GAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCAT610540.12357510590077303No Hit
CTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTC597930.12102280451935864No Hit
GCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAA593520.12013020744623909No Hit
ATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT586230.11865468983557209No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAA580980.11759207427233453No Hit
GAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCC575530.11648897811621173No Hit
TAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATA548510.11102005001741577No Hit
CAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAG547820.11088039197196169No Hit
CTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACC540950.10948988360635367No Hit
CAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGA537120.10871468025260134No Hit
ATGATTTGAGAAGCCTTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGA533910.10806496673679321No Hit
TTCGCTTCGAAGCGAAAAGTCCTAATAGTAGAAGAACCCTCCATAAACCT500820.10136745264393021No Hit
ATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTT494180.10002349696014025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)