FastQCFastQC Report
Fri 1 Jul 2022
EGAF00006205872

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205872
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50000000
Sequences flagged as poor quality0
Sequence length91
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAG1322040.264408No Hit
GAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATA1135000.22699999999999998No Hit
GGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTG1121890.224378No Hit
CTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAG1088520.21770399999999998No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT832140.166428No Hit
ATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAA794070.158814No Hit
CCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATT774140.154828No Hit
CTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAAT699510.139902No Hit
CCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCA685810.137162No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA666900.13338No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT661310.132262No Hit
CTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATG640310.12806199999999998No Hit
CTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAG610230.122046No Hit
CATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTA608710.121742No Hit
CTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTC595340.119068No Hit
ATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT580320.11606399999999999No Hit
CAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAG543430.108686No Hit
CAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGA537630.107526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)