FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49815330
Sequences flagged as poor quality0
Sequence length91
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAG1310860.26314389566424634No Hit
GAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATA1116300.22408764530918493No Hit
GGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTG1111300.22308393821741218No Hit
CTCGGACTACCCCGATGCATACACCACATGAAACATCCTATCATCTGTAG1071710.2151365854647555No Hit
CATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCT825220.16565583325454233No Hit
ATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAA780370.15665258064134072No Hit
CCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCATT766700.15390844545243404No Hit
CTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAAT687880.13808600685772834No Hit
CCCCGATGCATACACCACATGAAACATCCTATCATCTGTAGGCTCATTCA680460.13659650553353755No Hit
CTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCT656080.13170242975405363No Hit
CCCGACGTTACTCGGACTACCCCGATGCATACACCACATGAAACATCCTA653700.1312246651783698No Hit
CTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATG626050.12567416496086647No Hit
CTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAG602560.12095874904371808No Hit
CATGAAACATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTA602100.12086640799127497No Hit
CTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTC587830.11800182795135554No Hit
ATCCTATCATCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAAT577410.11591010237210111No Hit
GTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGAAA574120.11524966310571465No Hit
CAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAG533060.1070072204680768No Hit
CAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTCGCTTCGAAGCGA529580.10630864033220296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)