FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118253814
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG3726077331.509151155158516No Hit
CAACGCCT3442811929.1137493459619No Hit
ACCATAAC3322545528.09673014013738No Hit
GTGTATTA112586869.520780446032802No Hit
TGTGCGGA3111160.26309172573495176No Hit
CAACGCCA1469630.12427759835297997No Hit
ACCATAAA1239990.10485835154543091No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)