FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences118240854
Sequences flagged as poor quality0
Sequence length8
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGCGGG3725597831.508549490009603No Hit
CAACGCCT3440863829.10046471755016No Hit
ACCATAAC3326603028.13412528295846No Hit
GTGTATTA112344029.501286247475852No Hit
TGTGCGGA3115240.26346562077435604No Hit
CAACGCCA1470010.12432335781336627No Hit
ACCATAAA1229390.1039733694751562No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)