FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006205904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133239856
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCACGCT3973333629.820908842771495No Hit
TTACTCAG3228432124.230228078301135No Hit
AAGGGTGA2978103122.351443399938827No Hit
CGTTAATC2958821922.206732946334014No Hit
GCCACGCA2048500.1537452877463332No Hit
CGTTAATA1616100.12129253577097832No Hit
TTACTCAA1505330.11297895728737503No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)