FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156196405
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAGACCT4202012126.90210507725834No Hit
TGCCGTGG3860866724.718025360442837No Hit
GAGATGAC3712748123.76974105133854No Hit
ACTTCATA3600565923.051528618728454No Hit
TGCCGTGA2173420.13914660839985402No Hit
CTAGACCA1708120.1093571903911617No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)