FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121786031
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACTC3538198229.052578287899046No Hit
GCCTTGGT2985731924.516209909164377No Hit
AAACCTCA2788928722.90023475680885No Hit
TGTAGAAG2622645921.534866342758143No Hit
CTGGACTA1489440.12229974059997079No Hit
AAACATCA1259860.10344864592885862No Hit
AAACCTAA1257480.10325322121713615No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)