FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145250389
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGTAA3932077527.071029049016865No Hit
AAAGTGCT3565147024.54483615875204No Hit
CTGCAAGC3451620923.76324720204364No Hit
GCTACCTG3381722523.282020263642806No Hit
GCTACCTA2548310.1754425593999614No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)