FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99529890
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCCCAT2655563626.681066361070027No Hit
TGCGAATG2638127126.505877782041154No Hit
CTTAGTCA2438524024.500418919381907No Hit
ACATTGGC2086046020.958990309343253No Hit
TGCGAATA1345700.1352056151172276No Hit
ACATTGGA1256510.12624448796235985No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)