FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123386885
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC3271345326.512909374444455No Hit
CACTGACT3199805825.93311112441164No Hit
TCAGTCAA2860097823.179917379387607No Hit
GGTACGGG2822551922.875623288488075No Hit
GGTACGGA2129380.17257749881602083No Hit
TTAGTCAA1234900.10008357047023271No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)