FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122009008
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATTC3239432526.550765005810064No Hit
CACTGACT3159884825.898782817740802No Hit
TCAGTCAA2821732323.127245653861888No Hit
GGTACGGG2791906022.882785834960647No Hit
GGTACGGA2109350.17288477585196005No Hit
TTAGTCAA1222360.10018604527954199No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)