FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95347956
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT2795608229.320064291677106No Hit
ACTCAGAC2585176827.113080431425296No Hit
GAGGTTTA2205896423.13522483900966No Hit
CGCTCAGG1787486918.746987088008474No Hit
GAGGTTAA2505370.262760745495163No Hit
GGCTCAGG1637420.17173100176368752No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)