FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94201277
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAAGCCT2759354529.292113524108597No Hit
ACTCAGAC2551196127.082394010433635No Hit
GAGGTTTA2175724523.096549954413035No Hit
CGCTCAGG1768239218.770862310072506No Hit
GAGGTTAA2471840.26239983986628973No Hit
GGCTCAGG1850650.1964569970744664No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)