FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125454463
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT3379555526.93850357479909No Hit
TTGTTCTA3255663525.950957998202107No Hit
ACACCGGG2912281023.213849315189368No Hit
CATAATCC2770073822.080312918002765No Hit
GGCGGACT3087530.24610762552146112No Hit
GTGTTCTA2888420.23023652813371812No Hit
ACACCGGA1686510.13443204487671356No Hit
TTGTTCAA1465140.11678659849669916No Hit
CATAATCA1262070.10059984872758172No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)