FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123765529
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGGAAT3350055627.06775971522733No Hit
TTGTTCTA3201577925.868090459985833No Hit
ACACCGGG2869495323.184931403638245No Hit
CATAATCC2719660021.97429301982784No Hit
GTGTTCTA3313220.26770135648998034No Hit
GGCGGACT3244130.2621190266960359No Hit
ACACCGGA1660800.1341892216208279No Hit
TTGTTCAA1454470.11751818230421816No Hit
CATAATCA1268200.10246794969865963No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)