FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205960

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205960
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96862721
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT2912596630.069324606315778No Hit
TTTATCCC2825884629.174119525302206No Hit
CAGGAAGA2640312427.258292692397106No Hit
AGCTCGAG1122797811.59164009030884No Hit
GCACGTTA2951050.30466313247590887No Hit
TTTATCCA2151030.22206995403319302No Hit
TGCTCGAG1012990.10457996528922618No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)