FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95826520
Sequences flagged as poor quality0
Sequence length8
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTTT2880586630.06043212254812No Hit
TTTATCCC2791255229.12821210662769No Hit
CAGGAAGA2609658027.23315007160857No Hit
AGCTCGAG1111783811.602047115975827No Hit
GCACGTTA2899280.3025550755678073No Hit
TTTATCCA2136450.2229497638023378No Hit
TGCTCGAG1129670.11788698994808534No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)