FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122044591
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCTGATC3415458027.985328739394934Illumina PCR Primer Index 9 (100% over 8bp)
TCACTCCT3294759226.996355782781066No Hit
CGTGCTAA2712423622.224857142583236No Hit
GAGAAGGG2578307921.12594977683198No Hit
TCACTCCA1938790.15885915009539422No Hit
GAGAAGGA1637740.13419193645378352No Hit
CTCTGATC1467140.12021343903721224No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)