FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122044591
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCATCTTTCGAT1896160.1553661644865523No Hit
TCAGGGCGTCCAAGAG1879220.1539781472167005No Hit
ACTACCCAGAGCCTGA1772450.145229705427912No Hit
AATGTCGCATTACACG1766340.14472906873849084No Hit
TGCTCGTGTACTTCGA1747100.14315259575903697No Hit
TGGACATGTAGGTCTT1637020.13413294162295158No Hit
TTCGATTAGTGAAACT1624490.13310626769194547No Hit
TGTTAGGAGACCTATC1618740.1326351284179403No Hit
AAGGAGCCAGCACATT1571070.12872917899327466No Hit
ATTGTGGTCGCACCGA1528930.1252763426443045No Hit
AATGGAATCATGTTCT1523860.12486092071052948No Hit
TAACTTCTCCATGACA1488880.12199475517927706No Hit
AGCCTTCCATGACTGT1479160.12119832496304567No Hit
ACCTGCTGTATGGGTG1473860.12076405745831047No Hit
TGCTTTAGTCATCAAC1472870.12068293956591654No Hit
GTAGACTCAGTAGTCT1425380.11679173884895891No Hit
ATTCGTTTCCCGTAGG1423430.11663196118212235No Hit
TAGGAGGGTGGCGCTT1407770.11534882361152736No Hit
CTAGCGGTCGGTTAGT1380840.11314225306388219No Hit
GAGTGAGTCGCTACCT1369190.11218768392611517No Hit
TCACAGACAAACTACC1353080.1108676745862502No Hit
TGCGTAAAGCTCGGCT1343860.11011221300254101No Hit
AACCGATTCCAGGTAT1326800.10871436326088388No Hit
ACGTTAGTCGGGAATG1326440.10868486584546791No Hit
TAGGTCAGTTCCAATG1320970.10823666900567515No Hit
ACTGCAAGTAGTCTGT1299050.10644060415590233No Hit
ACAAGCTCACGCCGAT1289420.10565154829352494No Hit
GCTCACTCATGGTTTG1261250.10334337553722474No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)