FastQCFastQC Report
Tue 28 Jun 2022
EGAF00006205982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120398466
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGCATCTTTCGAT1891660.1571166197416502No Hit
TCAGGGCGTCCAAGAG1862110.15466226953423146No Hit
ACTACCCAGAGCCTGA1750240.1453706229114248No Hit
AATGTCGCATTACACG1740200.14453672524365882No Hit
TGCTCGTGTACTTCGA1724620.14324268882296226No Hit
TGGACATGTAGGTCTT1621830.1347052046327567No Hit
TTCGATTAGTGAAACT1611280.1338289476213094No Hit
TGTTAGGAGACCTATC1557440.12935712984914607No Hit
AAGGAGCCAGCACATT1541360.12802156466013445No Hit
ATTGTGGTCGCACCGA1514380.125780672321855No Hit
AATGGAATCATGTTCT1500460.12462451141196434No Hit
AGCCTTCCATGACTGT1471120.12218760328723789No Hit
TAACTTCTCCATGACA1471030.12218012810894119No Hit
ACCTGCTGTATGGGTG1465790.12174490661699959No Hit
TGCTTTAGTCATCAAC1459690.12123825564355611No Hit
ATTCGTTTCCCGTAGG1407730.11692258604025735No Hit
GTAGACTCAGTAGTCT1406360.11680879721507416No Hit
TAGGAGGGTGGCGCTT1397280.11605463478247305No Hit
CTAGCGGTCGGTTAGT1368490.11366340830289316No Hit
GAGTGAGTCGCTACCT1348090.1119690345556396No Hit
TGCGTAAAGCTCGGCT1327410.11025140469812962No Hit
AACCGATTCCAGGTAT1317910.1094623581001439No Hit
TCACAGACAAACTACC1317580.10943494911305597No Hit
ACGTTAGTCGGGAATG1314860.10920903261342216No Hit
TAGGTCAGTTCCAATG1311280.1089116866322865No Hit
ACTGCAAGTAGTCTGT1291150.10723973841992304No Hit
ACAAGCTCACGCCGAT1280260.10633524184602153No Hit
GCTCACTCATGGTTTG1244960.10340331080297983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)