FastQCFastQC Report
Thu 7 Jul 2022
EGAF00006205984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125707656
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTT4009582431.89608753821645No Hit
TAGACGAC3379197626.881398536299173No Hit
ACCGAACA3221067325.62347753902913No Hit
GTTTGTGG1707289613.581428962449193No Hit
GGTTGTGG5516410.4388284831275511No Hit
CGACTCTA2547180.20262727673483943No Hit
GTGTGTGG1888150.15020167108994537No Hit
GTTTGTGA1543260.12276579240328847No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)