FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123890203
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGACTCTT3950014831.88318934306694No Hit
TAGACGAC3333558426.90736086694442No Hit
ACCGAACA3169556025.583588720086286No Hit
GTTTGTGG1672366413.49877843044619No Hit
GGTTGTGG5954300.4806110455723444No Hit
CGACTCTA2496390.20150019449076212No Hit
GTGTGTGG2091000.16877847879545407No Hit
GTTTGTGA1506130.12156974187862135No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)