FastQCFastQC Report
Thu 23 Jun 2022
EGAF00006205996

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00006205996
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99696271
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTACCTAC2696978327.051947609956244No Hit
ACGTTACA2405794324.13123656350196No Hit
CGTAGGTT2364864623.720692622495378No Hit
GACGACGG2356770723.639507038332457No Hit
GACGACGA1730580.1735852286792151No Hit
CGTAGGTA1513100.15177097245693372No Hit
TTACCTAA1337850.13419258178673504No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)